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monarch-initiative / monarch-legacy

Monarch web application and API
BSD 3-Clause "New" or "Revised" License
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new Analyze Phenotype options #1410

Open mellybelly opened 7 years ago

mellybelly commented 7 years ago

I've been working on an example, where I want to compare a set of diseases based upon their phenotypes. I don't want the tool to tell me what is most similar (e.g. standard Phenogrid), or input a set of phenotypes. Rather, I want to give the tool a set of diseases and show me the phenotypic overlap.

This could use Phenogrid for display or @kshefchek new clustering viz when that is ready.

drseb commented 7 years ago

Sounds like you want MGSA for phenotypic profiles. Should use ontologizer or maybe @cmungall has his own overrepresentation tool somewhere!?

mellybelly commented 7 years ago

Probably should have a think about how the ontologizer/phenomizer fit with the Analyze phenotypes tooling on monarch app more generally