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monarch-initiative / monarch-legacy

Monarch web application and API
BSD 3-Clause "New" or "Revised" License
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no homologs showing up for Equus caballus #951

Open mellybelly opened 9 years ago

mellybelly commented 9 years ago

see http://monarchinitiative.org/gene/NCBIGene:100072706 for example, there should be plenty of homologs as this is pitx1

jmcmurry commented 9 years ago

@nlwashington do you think this is a ticket that will be resolved with next data release? Aspirationally tagging it for this release, but if it is more involved, feel free to push back.

nlwashington commented 9 years ago

i just re-encountered this issue as well. the problem is that due to some scaling issues, we cut back on the orthologies that we're pulling in from panther; we are only pulling in the orthologies for human, fish, and mouse species. note however, with the latest load, we should be pulling in selected orthologies for genes with annotations in OMIA, but it won't be all of them. we really do need to add in panther. it also necessitates my pulling additional species/genes from ensembl to ensure we have the bi-directional equivalences for the gene ids.

panther is ready to go with more orthology data once @jnguyenx and @cmungall figure out the scaling problems. please let me know if this can be ready for nov release.

jmcmurry commented 8 years ago

Just curious whether there is any update on this? @jnguyenx and @cmungall