Create Monarch KG enriched variant of Phenio for experimentation

monarch-initiative / monarch-semantic-similarity-profiles

MIT License

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Closed matentzn closed 4 months ago

matentzn commented 11 months ago

Pseudocode

kg.ingestible.kgx->kg.ingestible.ttl (say g2p)
O = ROBOT_MERGE(kg.ingestible.ttl, PHENIO)
runoak semsimian O --relations g2p,p,i

kg.ingestible.kgx is an rdf dump created by Koza on a data modality we are interested in, such as gene to disease.

This ticket can be closed when we have one example implemented:

PHENIO + HPOA or PHENIO + g2d

matentzn commented 4 months ago

NO, use Monarch Phenio instead.