monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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Rename ICD11 prefixes? #489

Open joeflack4 opened 5 months ago

joeflack4 commented 5 months ago

Overview

ICD11 Ingest

434 introduces new prefixes from the ICD11 ingest: icd11.foundation, id11.schema, and icd11.z. These prefixes are probably good as-is, though icd11.z (http://who.int/icd#Z_), which I believe refers to obsoleted classes in the foundation, could probably be given better naming.


In addition to these new foundation prefixes, there are existing ICD11 prefixes in mondo-ingest. However, just having it be "ICD11" is ambiguous. It doesn't tell us whether or not it pertains to the foundation (it doesn't) or a particular linearization.

Orphanet In the case of Orphanet, 100% of their ICD11 and ICD-11 references are to what I call ICD11MMS (Morbidity and Mortality Statistics), so I suggest that we rename these prefixes to ICD11MMS.

NCIT and DOID Apparently NCIT and DOID also have ICD11 xrefs, but I don't know anything about these.

Others I don't yet know with 100% certainty if there are other ICD11 xrefs coming in from elsewhere.

Sub-tasks

joeflack4 commented 5 months ago

@twhetzel @matentzn @hrshdhgd feedback welcome.

matentzn commented 5 months ago

Great issue, thanks. Yes to all. I am not bothered about icd11.z as we will never see it in Mondo itself.