monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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Create ORDO subset ROBOT template #510

Closed joeflack4 closed 1 month ago

joeflack4 commented 2 months ago

Resolves #509 Resolves #511 Resolves #515 May address #514

Overview

Creates a ROBOT template to update mondo terms with the correct ORDO subset annotation.

See results: google sheet

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

QC

Build / data / qc PR: #543 Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after docker pull obolibrary/odkfull:dev), and no errors occurred?

New Packages

Were any new Python packages added?

Were any other non-Python packages added?

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

matentzn commented 2 months ago

@matentzn do the Mondo terms from the sssom file need to be filtered by predicate=skos:exactMatch? See Line 31

Yes! We only care about exact matches in this pipeline.