monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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update ordo exclusions #562

Closed twhetzel closed 5 months ago

twhetzel commented 5 months ago

related to mondo #7437

Overview

TODO

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

QC

Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after docker pull obolibrary/odkfull:dev), and no errors occurred?

New Packages

Were any new Python packages added?

Were any other non-Python packages added?

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

sabrinatoro commented 5 months ago

I am a bit confused by these comments.

1) All terms excluded should have an exclusion reason. This exclusion code is a way to document "why" the term is excluded from Mondo. (Maybe it is already or will at a later time be included in some mapping files) 2) @twhetzel I think you could use a more specific exclusion code. For example: MONDO:excludeGroupingHeritability (see exclusion code document) 3) This is just a file update, so I don't think we need to do anything else.

twhetzel commented 5 months ago

Joe - I am here on this PR as a curator for information for Sabrina to review, but good for you to have looked at this too.

joeflack4 commented 5 months ago

Joe - I am here on this PR as a curator for information for Sabrina to review, but good for you to have looked at this too.

@twhetzel Yes, feel free to overrule, but I intend to at least look at every issue and PR that comes through mondo-ingest.

I can also do so mutedly for these types of PRs; I suppose I don't have to comment / add a formal reivew.