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monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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Investigate: Why lexmatch `df`s with no `confidence` values #585

Open joeflack4 opened 5 months ago

joeflack4 commented 5 months ago

Overview

We recently ran into #583, and @matentzn applied a hotfix (#581). However, this fact that there are lexmatch dataframes being passed around in lexmatch-sssom-compare.py is unexpected and could point to a greater issue / other potential bugs.

joeflack4 commented 4 months ago

This should ideally be looked into, but we're considering a low priority now. We think it could take like 3 hours of deep code debugging to find the original source of this issue. And we already have workaround fixes for this in both mondo-ingest and sssom-py, so this is a lower priority.

It seems to be the result of us doing a whole lot of curation at once.