Lexmatch files have some duplicate lines

monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources

https://monarch-initiative.github.io/mondo-ingest/

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Lexmatch files have some duplicate lines #591

Open twhetzel opened 5 days ago

twhetzel commented 5 days ago

Overview

Duplicate lines in lexmatch files were identified in this PR.

Questions

[ ] 1. Does this only appear in the 'split-mappings/' folder?
- If so, curation doesn't even look in this folder so it's not such a problem. More of a problem if these appear in _lex or _lex_exact files

Additional details

Trish has done an initial investigation.

sabrinatoro commented 5 days ago

It is expected that there are duplicated lines, because, for the same Mondo-resource matches, some lexmatch could be label to synonym, other synonym to synonym, etc.

joeflack4 commented 5 days ago

True, but these are even more duplicative than that. The rows Trish highlighted are exactly the same; it isn't just that 1 row is like a label match and the other is a synonym.