`fatal: detected dubious ownership in repository`

[joeflack4]

Resolves #633

Overview

Bug fix for 'fatal: detected dubious ownership in repository'

• Updated 2 related goals in the 'tmp/mondo/ artefacts pipeline'. Added lines which will prevent this error from occurring.

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

• [ ] Yes
• [x] No, updates to the docs were not necessary after careful consideration

QC

Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after docker pull obolibrary/odkfull:dev), and no errors occurred?

• [ ] Yes
• [ ] No, there are no functional (code-related) changes to the pipeline in the PR, so no re-run is necessary

Build:

• 636

New Packages

Were any new Python packages added?

• [ ] Yes, requirements.txt.full was updated and an ODK issue submitted
• [x] No

Were any other non-Python packages added?

• [ ] Yes, Dockerfile updated and an ODK issue submitted
• [x] No

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

• [ ] Yes

[twhetzel]

Since https://github.com/monarch-initiative/mondo-ingest/pull/594 was merged, closing this PR.

Let's keep in mind if this change was included in the Synonym sync, it needs to be removed.