Bug fix: ICD11 "label not found" `RuntimeError`

[joeflack4]

Overview

Fixed bug in the problematic xrefs pipeline where an error would be thrown if there was no ICD11 label. The problem was that (i) the SPARQL query only checked for labels on owl:Class, but not also rdfs:Description, and (ii) tmp/component-download-*.ow.owl was being used instead of components/*.owl.

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

• [ ] Yes
• [x] No, updates to the docs were not necessary after careful consideration

QC

Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after docker pull obolibrary/odkfull:dev), and no errors occurred?

• [ ] Yes
• [ ] No, there are no functional (code-related) changes to the pipeline in the PR, so no re-run is necessary

Build

• 635

  • Implementation changed so we'll need to do a new build.

New Packages

Were any new Python packages added?

• [ ] Yes, requirements.txt.full was updated and an ODK issue submitted
• [x] No

Were any other non-Python packages added?

• [ ] Yes, Dockerfile updated and an ODK issue submitted
• [x] No

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

• [ ] Yes

[twhetzel]

I converted this to a Draft for now now so that does not accidentally get merged. I'll decide after 11am PT if this branch will be used at all and close as needed.

[twhetzel]

Closing since we decided to go with this PR https://github.com/monarch-initiative/mondo-ingest/pull/637