monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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Replace `bioregistry` dependency with `curies` #648

Closed joeflack4 closed 1 week ago

joeflack4 commented 1 month ago

Resolves #584

Overview

Replace any bioregistry usage with curies instead, and remove any installations of bioregistry.

Pre-merge checklist

Documentation

Was the documentation added/updated under docs/?

QC

Was the full pipeline run before submitting this PR using sh run.sh make build-mondo-ingest on this branch (after docker pull obolibrary/odkfull:dev), and no errors occurred?

Build:

New Packages

Were any new Python packages added?

Were any other non-Python packages added?

PR Review and Conversations Resolved

Has the PR been sufficiently reviewed by at least 1 team member of the Mondo Technical team and all threads resolved?

Additional info

Didn't find any actual current usages of bioregistry. There were some comments/todo's referencing bioregistry; updated those to curies.