Open cmungall opened 4 years ago
You mean the default redirect of term IRIs? Like http://purl.obolibrary.org/obo/MONDO_0000001
correct, the OBO PURLs. We also want to make this prominent in user documentation, to guide people implementing external infrastructure who want to link to MONDO
It would be good to have a linkout mechanism in OLS to link to Monarch from there
How would the backlink work? Via xref or something else that hardcodes a link to monarch initiative?
identifiers.org used to give a choice of sites, now it seems to go to a default
there could be a registry of prefixes with expansions. This could be provided in OBO metadata
Or it could be a list of IDs that are submitted to OLS. Like NCBI linkouts
Need to be discussed in meeting.
@matentzn Agreed. Sorry if you guys are having to discuss these issues a second time w/ Dazhi gone. I've added needs clarification
label to this. I have some idea as to how I would do this in OMIM, but I'm not sure where I would go within this codebase to do this work. As for making URLs resolving (if or how), I'm not too sure on that either.
What needs to happen:
For example, for read an ID:
http://purl.obolibrary.org/obo/MONDO_0000001
and rewrite it and then create a CONSTRUCT query that adds:
https://monarchinitiative.org/disease/MONDO:0007947
Here is an example of a query that does something else, but you can get the picture: https://github.com/monarch-initiative/mondo/blob/master/src/sparql/construct/construct-umls-xrefs-from-ncit.sparql
OLS or Monarch site? I think the former as the latter will lag. cc @mellybelly