Add Monarch App backlinks to Mondo IDs

[cmungall]

OLS or Monarch site? I think the former as the latter will lag. cc @mellybelly

[matentzn]

You mean the default redirect of term IRIs? Like http://purl.obolibrary.org/obo/MONDO_0000001

[cmungall]

correct, the OBO PURLs. We also want to make this prominent in user documentation, to guide people implementing external infrastructure who want to link to MONDO

It would be good to have a linkout mechanism in OLS to link to Monarch from there

[matentzn]

How would the backlink work? Via xref or something else that hardcodes a link to monarch initiative?

[cmungall]

identifiers.org used to give a choice of sites, now it seems to go to a default

there could be a registry of prefixes with expansions. This could be provided in OBO metadata

Or it could be a list of IDs that are submitted to OLS. Like NCBI linkouts

[matentzn]

Need to be discussed in meeting.

[joeflack4]

@matentzn Agreed. Sorry if you guys are having to discuss these issues a second time w/ Dazhi gone. I've added needs clarification label to this. I have some idea as to how I would do this in OMIM, but I'm not sure where I would go within this codebase to do this work. As for making URLs resolving (if or how), I'm not too sure on that either.

[matentzn]

What needs to happen:

• [ ] create a SPARQL update query that reads all Mondo IDs, and then add a new annotation (rdfs:seeAlso) with a URL to https://monarchinitiative.org

For example, for read an ID:

http://purl.obolibrary.org/obo/MONDO_0000001

and rewrite it and then create a CONSTRUCT query that adds:

https://monarchinitiative.org/disease/MONDO:0007947

Here is an example of a query that does something else, but you can get the picture: https://github.com/monarch-initiative/mondo/blob/master/src/sparql/construct/construct-umls-xrefs-from-ncit.sparql