monarch-initiative / mondo

Mondo Disease Ontology
http://obofoundry.org/ontology/mondo
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[NTR] children of 'extrinsic allergic alveolitis' #1639

Closed nicolevasilevsky closed 2 years ago

nicolevasilevsky commented 4 years ago

related to https://github.com/obophenotype/human-phenotype-ontology/issues/5806

Type New term request
Bacteria: Thermophilic actinomycetes Farmers lung
Bacteria: Thermophilic actinomycetes bagasse workers lung - narrow syn?
Bacteria: Thermophilic actinomycetes mushroom workers lung - narrow syn
Bacteria: Thermophilic actinomycetes potato riddlers lung - narrow syn
Bacteria: Thermophilic actinomycetes compost workers lung
Bacteria: Thermophilic actinomycetes ventilation systems lung
Lichtheimia corymbifera Farmers lung
Acinetobacter, Ochrobactrum Metal working fluids lung
Streptomyces albus Compost workers lung
Klebsiella oxytoca Humidifiers lung
Bacillus subtilis enzymes Detergent industry lung
Mycobacterium avium complex and other nontuberculous mycobacteria Spa workers lung Mycobacterium immunogenum Metal working fluids lung
Mycobacterium immunogenum machine operator´s lung
Fungi: Alternaria alternate Humidifiers lung
Fungi: Alternaria alternate wood workers lung
Aspergillus spp. Stucco workers lung, tobacco growers lung, malt workers lung;
Trichosporon cutaneum Summer‐type HP
Penicillium glabrum Cork workers lung
Pencillium roqueforti Cheese workers lung
Penicillium verrucosum Food processors lung
Penicillium camemberti Food processors lung
Penicillium citreonigrum Peat moss processing workers lung
Cryptostroma corticale Maple bark strippers lung, florists lung
Botrytis cinerea Wine makers lung
Mucor stolonifera Paprika slicers lung
Rhodotorula Humidifiers lung
Mushrooms Shiitaki, Bunashimeji, Pleurotus, Pholiota, Shimeji
Agaricus Mushroom workers lung.
Enzymes Phytase, subtilisin
Animal feeding lung, cleaners lung
Animal & insect proteins
Avian serum and feather proteins Bird breeders lung
Rat serum proteins Laboratory workers lung
Pearl Pearl industry lung
Mollusk shell Nacre industries’ lung
Silk Textile workers lung
Carmine Food and cosmetic industries’ lung
Sitophilus granaries Farmers lung
Plant proteins
Tiger nut Food processors lung
Legumes (e.g. soy) Food processors lung
Malt Food processors lung
Alginate Seaweed workers lung
Woods Ramin
pine Wood workers lung
Esparto dust Stucco workers lung
Low molecular weight chemicals
Diisocyanates Chemical and polyurethane industry, painters lung
Acid anhydrides Plastic workers lung, aircraft industries’ lung
Acrylate compounds Dental technicians lung
Triglycidyl isocyanurate Painters lung (powder paint)
Pharmaceutical agents
penicillins, cephalosporins Pharmaceutical industry’s lung
Dimethyl phthalate and styrene Yacht manufacturing lung Metals
Cobalt Hard‐metal workers lung
Zinc Smelters lung
Zirconium Ceramic workers lung.
nicolevasilevsky commented 4 years ago

I assume we'd want to coordinate this with ECTO cc @laurenechan and @diatomsRcool

laurenechan commented 4 years ago

@nicolevasilevsky @diatomsRcool are we thinking we'd like to add in these exposure terms to ECTO?

nicolevasilevsky commented 4 years ago

Maybe. I'm trying to confirm with @cmungall if we want to add these terms.

nicolevasilevsky commented 3 years ago

Per mondo call - these are diseases

nicolevasilevsky commented 3 years ago

'occupational allergic alveolitis' should be a child of occupational lung disease

done PR https://github.com/monarch-initiative/mondo/pull/3087

nicolevasilevsky commented 3 years ago

to do: add some of these top level terms, add some synonyms