review infectious disease DP

[cmungall]

id: MONDO:0004619
name: measles
def: "A highly contagious viral infection caused by the measles virus. Symptoms appear 8-12 days after exposure and include a rash, cough, fever and muscle pains that can last 4-7 days. Measles vaccines are available to provide prophylaxis, usually combined with mumps and rubella vaccines (MMR)." [NCIT:P378]
subset: gard_rare {source="GARD:0003434"}
synonym: "Measles morbillivirus caused disease or disorder" EXACT [MONDO:patterns/specific_infectious_disease_by_agent]
synonym: "Measles morbillivirus disease or disorder" EXACT []
synonym: "Measles morbillivirus infectious disease" EXACT []
synonym: "morbilli" EXACT [CSP2005:3100-0554, DOID:8622]
synonym: "rubeola" RELATED [GARD:0003434]
synonym: "rubeola infection" EXACT [NCIT:C96406]
xref: DOID:8622 {source="MONDO:equivalentTo"}
xref: EFO:1002025 {source="MONDO:equivalentTo"}
xref: GARD:0003434 {source="MONDO:equivalentTo"}
xref: ICD10:B05 {source="DOID:8622", source="MONDO:equivalentTo"}
xref: ICD10:B05.9 {source="DOID:8622"}
xref: ICD9:055 {source="DOID:8622"}
xref: MESH:D008457 {source="DOID:8622", source="MONDO:equivalentTo"}
xref: NCIT:C96406 {source="DOID:8622", source="MONDO:equivalentTo"}
xref: SCTID:14189004 {source="DOID:8622", source="MONDO:equivalentTo"}
xref: SCTID:154338006 {source="DOID:8622"}
xref: UMLS:C0025007 {source="DOID:8622", source="NCIT:C96406", source="MONDO:equivalentTo"}
is_a: MONDO:0005108 {source="DOID:8622", source="EFO:1002025", source="MESH:D008457/inferred", source="NCIT:C96406", source="indirect", source="linkedlifedata", source="linkedlifedata/inferred"} ! viral infectious disease
intersection_of: MONDO:0005550 ! infectious disease
intersection_of: realized_in_response_to_stimulus NCBITaxon:11234 ! Measles morbillivirus
relationship: disease_has_feature HP:0012735 {source="Wikidata"} ! Cough
relationship: disease_has_feature MONDO:0001517 {source="Wikidata"} ! dysentery
property_value: seeAlso https://rarediseases.info.nih.gov/diseases/3434/measles xsd:anyURI {source="GARD:0003434"}

this is not right

this should classify in the metaclass infectious_disease_by_agent

the logical def should change to conform

we also need a check, as infectious diseases shouldn't use realized_in_response_to_stimulus

[cmungall]

we also need to define what is the end point of an infectious disease

name: infectious disease def: "A disorder resulting from the presence and activity of a microbial, viral, or parasitic agent. It can be transmitted by direct or indirect contact." [NCIT:C26726]

This is vague

is it intended that this covers subacute sclerosing panencephalitis (a chronic progressive encephalitis that develops a few years after measles infection)

what should the logical definition of chickenpox be?

if it is any infectious disease from varicella zoster and the definition of 'infectious disease' has no defined endpoint then chickenpox will include shingles as subtype. Is this desirable? I don't think so.

I think the def of infectious disorder should be changed to include the term 'directly'

e.g

name: infectious disease def: "A disorder directly resulting from the presence and activity of a microbial, viral, or parasitic agent. It can be transmitted by direct or indirect contact." [NCIT:C26726]

[nicolevasilevsky]

I think this can be closed?