monarch-initiative / mondo

Mondo Disease Ontology
http://obofoundry.org/ontology/mondo
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Add `mondo-all.sssom.tsv` and `mondo-xrefs.sssom.tsv` to `src/ontology/mappings` #5846

Open matentzn opened 1 year ago

matentzn commented 1 year ago

The mapping pipeline currently generates a sssom file with only the exact mappings.

For various use cases, including boomer and mondo source sync, we need mondo-all.sssom.tsv as well, which simply adds (for all sources allowed in mondo.sssom.tsv) also skos:broadMatch, skos:closeMatch, skos:narrowMatch.

We also need mondo-xrefs.sssom.tsv, which contains all mappings where oboInOwl:hasDbXref is the predicate, but the subject_id, object_id combination _does not appear in mondo-all.sssom.tsv.

matentzn commented 1 year ago
hrshdhgd commented 1 year ago

Mondo Mapping set id: http://purl.obolibrary.org/obo/mondo/mappings/mondo.sssom.tsv