monarch-initiative / mondo

Mondo Disease Ontology
http://obofoundry.org/ontology/mondo
Creative Commons Attribution 4.0 International
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Mondo to genes #607

Closed fjlogrono closed 3 years ago

fjlogrono commented 5 years ago

Is there any way to get out of a mondo code, a list of genes?

There is a call in the monarch API, but the result is too complex to extract a list of genes for each disease code.

It would also be interesting to be able to use OMIM or MGI code, which is what this call returns: https://monarchinitiative.org/analyze/phenotype.json?input_items

That is, from a code MONDO, OMIM, or MGI, to obtain a list of genes.

cmungall commented 5 years ago

You can use biolink for this: https://api.monarchinitiative.org/api/