actinobacillosis has unsupported subclassOf axioms

[nicolevasilevsky]

@katiermullen do you agree that these superclasses are correct for this term?

• is_a: MONDO:0024913 ! cattle disease
• is_a: MONDO:0024950 ! horse disease
• is_a: MONDO:0024985 ! sheep disease
• is_a: MONDO:0024990 ! swine disease

[Term]
id: MONDO:0005630
name: actinobacillosis
def: "A disease characterized by suppurative and granulomatous lesions in the respiratory tract, upper alimentary tract, skin, kidneys, joints, and other tissues. Actinobacillus lignieresii infects cattle and sheep while A. equuli infects horses and pigs." [MESH:D000187]
synonym: "actinobacillosis, NOS" RELATED EXCLUDE [DOID:4974]
xref: DOID:4974 {source="EFO:0007127", source="MONDO:equivalentTo"}
xref: EFO:0007127 {source="MONDO:equivalentTo"}
xref: MESH:D000187 {source="EFO:0007127", source="DOID:4974", source="MONDO:equivalentTo"}
xref: SCTID:16140007 {source="DOID:4974", source="MONDO:equivalentTo"}
xref: UMLS:C0001247 {source="DOID:4974", source="MONDO:equivalentTo"}
is_a: MONDO:0005583 {source="MESH:D000187"} ! non-human animal disease
is_a: MONDO:0024913 ! cattle disease
is_a: MONDO:0024950 ! horse disease
is_a: MONDO:0024985 ! sheep disease
is_a: MONDO:0024990 ! swine disease
is_a: MONDO:0700050 {source="DOID:4974/inferred", source="EFO:0007127", source="MESH:D000187/inferred", source="MONDO:Redundant"} ! bacterial infectious disease, non-human animal
is_a: MONDO:0700059 {source="MESH:D000187", source="MONDO:Redundant"} ! Actinobacillus infectious disease, non-human animal
relationship: disease_has_infectious_agent NCBITaxon:723 ! Actinobacillus ureae
property_value: RO:0002175 NCBITaxon:9796 {source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}
property_value: RO:0002175 NCBITaxon:9823 {source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}
property_value: RO:0002175 NCBITaxon:9913 {source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}
property_value: RO:0002175 NCBITaxon:9940 {source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}

[nicolevasilevsky]

there are a lot of classes with unsupported superclass axioms, like this

[Term]
id: MONDO:0005908
name: peste des petits ruminants infectious disease
def: "A highly fatal contagious disease of goats and sheep caused by peste-des-petits-ruminants virus. The disease may be acute or subacute and is characterized by stomatitis, conjunctivitis, diarrhea, and pneumonia." [MESH:D029021]
synonym: "Peste des petits ruminants" RELATED [MESH:D029021]
synonym: "Pseudorinderpest" RELATED [MESH:D029021]
synonym: "Small ruminant morbillivirus caused disease or disorder" EXACT [MONDO:patterns/specific_infectious_disease_by_agent]
synonym: "Small ruminant morbillivirus disease or disorder" EXACT []
synonym: "Small ruminant morbillivirus infectious disease" EXACT []
xref: DOID:3532 {source="MONDO:obsolete", source="EFO:0007431"}
xref: EFO:0007431 {source="MONDO:equivalentTo"}
xref: MESH:D029021 {source="MONDO:equivalentTo", source="EFO:0007431"}
xref: UMLS:C0949885 {source="MONDO:equivalentTo"}
is_a: MONDO:0005583 {source="MESH:D029021"} ! non-human animal disease
is_a: MONDO:0024913 ! cattle disease
is_a: MONDO:0024985 ! sheep disease
is_a: MONDO:0024990 ! swine disease
is_a: MONDO:0025003 ! goat disease
is_a: MONDO:0700053 {source="EFO:0007431", source="MESH:D029021/inferred"} ! viral infectious disease, non-human animal
intersection_of: MONDO:0700049 ! infectious disease, non-human animal
intersection_of: MONDO:0100332 NCBITaxon:31604 ! disease has primary infectious agent Small ruminant morbillivirus
property_value: RO:0002175 NCBITaxon:9823 {source="ISBN-13:978-0323088398", source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}
property_value: RO:0002175 NCBITaxon:9913 {source="ISBN-13:978-0323088398", source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}
property_value: RO:0002175 NCBITaxon:9925 {source="ISBN-13:978-0323088398", source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}
property_value: RO:0002175 NCBITaxon:9940 {source="ISBN-13:978-0323088398", source="https://orcid.org/0000-0002-4142-7153", source="https://orcid.org/0000-0002-5002-8648"}

were these superclasses added recently?

cc @sabrinatoro

[katiermullen]

@nicolevasilevsky I agree that 'actinobacillosis' occurs in the non-human animal species listed - cattle, horse, swine and sheep.

'peste des petits ruminants' affects small ruminants - sheep and goats. Other ruminants can seroconvert, but the disease mostly occurs in sheep and goats. See for example, PMID: 31038322.

[nicolevasilevsky]

@katiermullen could you please add your ORCID to these superclass assertions?

[katiermullen]

@nicolevasilevsky Can I remove the superclasses 'cattle' and 'swine' for 'peste des petits ruminants' based on my knowledge and PMID: 31038322 that it is mostly a sheep and goat disease and cattle and swine have asymptomatic infections?

[sabrinatoro]

@nicolevasilevsky these superclasses that are not supported might be because we added them and didn't add our orcid. If we remove all subclassOf axioms that are unsupported, can we please ignore the non-human disease for now?

@katiermullen, we can review these together. The problem is not the superclasses themselves, the issue is to make sure that we have a source (and/or an orcid) to indicate that this has been reviewed. I think there are a lot of these from the very beginning of the project, I can find the spreadsheet we have both worked on.

[katiermullen]

Thank you @sabrinatoro!