Mass Obsoletion: focus on branch 'inflammatory disease' (MONDO:0021166)

[sabrinatoro]

branch : 'inflammatory disease' (MONDO:0021166)

Terms to obsolete:

obsoletion candidate ID	obsoletion candidate label
http://purl.obolibrary.org/obo/MONDO_0015144	brain inflammatory disease
http://purl.obolibrary.org/obo/MONDO_0020069	chronic encephalitis
http://purl.obolibrary.org/obo/MONDO_0033947	hereditary angioedema with normal C1Inh
http://purl.obolibrary.org/obo/MONDO_0015591	limbic encephalitis associated with antibodies to cell membrane antigens
http://purl.obolibrary.org/obo/MONDO_0019541	non-infectious posterior uveitis
http://purl.obolibrary.org/obo/MONDO_0020537	occupational allergic alveolitis
http://purl.obolibrary.org/obo/MONDO_0015488	predominantly large-vessel vasculitis
http://purl.obolibrary.org/obo/MONDO_0015489	predominantly medium-vessel vasculitis
http://purl.obolibrary.org/obo/MONDO_0015490	predominantly small-vessel vasculitis
http://purl.obolibrary.org/obo/MONDO_0018745	superficial pemphigus

Removed from obsoletion list (see comment below) obsoletion candidate ID	obsoletion candidate label
http://purl.obolibrary.org/obo/MONDO_0018640	secondary vasculitis

• [x] we need to remove the obsoletion tag from this term

[nicolevasilevsky]

spreadsheet here

[nicolevasilevsky]

There is an explanatory video linked here

[nicolevasilevsky]

we should keep secondary vasculitis - it seems like a legitmate disease as pointed out by Sylvia Matenzoglu and a google search

See this source: "In some cases, vasculitis occurs due to an underlying condition, which is referred to as secondary vasculitis. Secondary vasculitis can be caused by:

Infections – most cases of cryoglobulinemia are caused by the hepatitis C virus infection, and the hepatitis B virus infection can cause polyarteritis nodosa. Immune system diseases – rheumatoid arthritis, lupus, and scleroderma can lead to vasculitis. Allergic reactions – an allergic reaction to a medication can cause vasculitis. Blood cell cancers – leukemia and lymphoma can cause vasculitis. Exposure to chemicals/drugs."

Also: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5873754/: "Secondary vasculitis Secondary causes of vasculitis (frequent causes seen on the acute medical admission ward) include infection, drugs, connective tissue disease (CTD) and malignancy."

I wonder if we need a new 'primary vasculitis' term (in additional to 'primary central nervous system vasculitis'.

I will create a new ticket for this

[nicolevasilevsky]

@sabrinatoro can you review the 'leaves the branch' terms. I reviewed the orphaned terms that Sylvia assigned

thanks!

[nicolevasilevsky]

note, this is ready for mass obs/PR

[sabrinatoro]

Expert review feedback: https://docs.google.com/spreadsheets/d/17ykzzKh9NHUmuwhFLBQZtPUJB2cj6cUq/edit#gid=1947315922

TO DO:

• [ ] add new parents ("ROBOT Reviewer-Curator Agree - Stay" Tab)
• [ ] add new comments ("ROBOT Reviewer-Curator Agree - Leave" Tab) !!!!1 term comment will need to be added manually
• [ ] add new parents ("ROBOT Reviewer-Stay Curator-Leave" Tab)

Note: Once the to-do list is done, 8 terms for which reviewers disagreed will remain to be assessed 1 terms for which reviewers were unsure will remain to be assessed

[sabrinatoro]

There are some comments from the community that should be reviewed, but this is future work. This issue can be closed for now.