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Mondo Disease Ontology
http://obofoundry.org/ontology/mondo
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[Merge] "non-atopic asthma" with "intrinsic asthma"? #7691

Open matentzn opened 2 months ago

matentzn commented 2 months ago

I stumbled across this in #7685. The two classes have the same exact synonym after fixing the typos.

Mondo term (ID and Label)

[Term]
id: MONDO:0800112
name: non-atopic asthma
def: "A type of asthma that isn't related to an allergy trigger like pollen or dust, and is less common than atopic asthma." [PMID:23724224]
synonym: "intrinsic asthma" EXACT [https://orcid.org/0000-0002-7371-8158, https://orcid.org/0000-0003-0113-912X]
synonym: "non-allergic asthma" EXACT [https://orcid.org/0000-0002-7371-8158, https://orcid.org/0000-0003-0113-912X]
is_a: MONDO:0004979 {source="https://orcid.org/0000-0002-7371-8158", source="https://orcid.org/0000-0003-0113-912X"} ! asthma
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/5261" xsd:anyURI
[Term]
id: MONDO:0004765
name: intrinsic asthma
def: "An asthma that is triggered by factors not related to allergies such as anxiety, stress, exercise, cold air, dry air, hyperventilation, smoke, viruses, chemical irritants, autonomic imbalance, hormonal deficiencies and psychogenic influences. It is characterized by airway obstruction and inflammation that is at least partially reversible with medication. The symptoms include coughing, wheezing, shortness of breath or rapid breathing, and chest tightness." [DOID:9360, http://www.aafa.org/display.cfm?id=8&sub=17, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1532783/pdf/califmed00272-0002b.pdf]
xref: DOID:9360 {source="MONDO:equivalentTo"}
xref: ICD10CM:J45 {source="DOID:9360"}
xref: ICD9:493.1 {source="DOID:9360"}
xref: SCTID:155576005 {source="DOID:9360"}
xref: SCTID:195973000 {source="DOID:9360"}
xref: SCTID:195976008 {source="DOID:9360"}
xref: SCTID:266361008 {source="DOID:9360", source="MONDO:equivalentTo"}
xref: SCTID:266397004 {source="DOID:9360"}
xref: SCTID:8312004 {source="DOID:9360"}
xref: UMLS:C0155880 {source="DOID:9360", source="MONDO:equivalentTo"}
is_a: MONDO:0004979 {source="DOID:9360"} ! asthma
disjoint_from: MONDO:0004784 ! allergic asthma
relationship: disease_has_feature HP:0000739 ! Anxiety
relationship: disease_has_feature HP:0002099 ! Asthma
relationship: disease_has_feature HP:0002883 ! Hyperventilation

Reason for deprecation

Non-atopic asthma and intrinsic asthma are generally considered to be the same. These terms describe a type of asthma that is not triggered by allergic reactions, which is distinct from atopic or extrinsic asthma that is typically triggered by allergens such as pollen, dust mites, or pet dander. --- ChatGPT

Term to be merged with

Your nano-attribution (ORCID)

https://orcid.org/0000-0002-7356-1779

sabrinatoro commented 2 months ago

This issue blocks this PR

sabrinatoro commented 2 months ago

I removed the "intrinsic asthma" synonym from MONDO:0800112 to resolve the QC fail until these terms are merged

katiermullen commented 1 month ago

Agree with the merging of MONDO:0800112 non-atopic asthma into MONDO:0004765 intrinsic asthma because they represent the same concept.

nicolevasilevsky commented 1 month ago

@sabrinatoro this does not have an obsoletion tag, it needs to be tagged (I didn't check the list)

sabrinatoro commented 1 month ago

Thank you. It is on the list (though there was not "on list" tag)