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monarch-initiative / mondo

Mondo Disease Ontology
http://obofoundry.org/ontology/mondo
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Inconsistent use of GARD IDs #7883

Open twhetzel opened 3 months ago

twhetzel commented 3 months ago

In reviewing the term MONDO:0007804 'Pallister-Hall syndrome' for another ticket, I noticed that the GARD ID exists in two different formats. One where the number has zero padding (GARD:0007305) when added as the source value for a seeAlso and when added as am xref for to a synonym. Then when used as a database_cross_reference it does not have zero padding (GARD:7305).

Screenshot 2024-06-28 at 3 19 50 PM

Screenshot 2024-06-28 at 3 20 16 PM

Unclear if this is a one-off or needs to be explored further than just this example.

sabrinatoro commented 3 months ago

@matentzn I am assigning this one to you.

matentzn commented 3 months ago

This is true, the GARD evidence from synonyms is from the old version, while the GARD xrefs are new. I would suggest we remove GARD evidence from synonyms until we get preferred label lists from them.. if you agree, I can make it happen

sabrinatoro commented 3 months ago

I agree, @matentzn. Thank you for making it happen!

matentzn commented 3 months ago

Needs to be put on our 1:1 Sabrina and I can do it right then and there when you think it becomes a priority