monarch-initiative / mondo

Mondo Disease Ontology
http://obofoundry.org/ontology/mondo
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Fix typos in synonym xrefs #7957

Closed twhetzel closed 4 months ago

twhetzel commented 4 months ago

As part of the review of Mondo for the Synonym sync pipeline, the xrefs on synonyms in Mondo were reviewed and there are a handful of xrefs that have some typos/errors:

NOTE: The current analysis was limited to only these prefixes:

prefixes = [
    'OMIM', 'OMIMPS', 'Orphanet', 'DOID', 'NCIT', 'MESH', 'UMLS', 
    'ICD9CM', 'EFO', 'ICD10CM', 'OMOP', 'SCTID', 'ClinGen', 'MEDGEN', 
    'ICD9', 'MedGen', 'ICD11', 'OMIA'
]

The entire list of unique prefixes for synonym xrefs is:

['NCIT', nan, 'DOID', 'GARD', 'OMIMPS', 'https', 'Orphanet', 'PMID',
       'MONDO', 'OMIM', 'Wikipedia', 'MESH', 'MONDORULE', 'NORD', 'UMLS',
       'ONCOTREE', 'ICD9CM', 'EFO', 'doi', 'http', 'ICD10CM', 'OMOP',
       'SCTID', 'MTH', 'ISBN-13', 'GTR', 'HP', 'OGMS', 'MedDRA',
       'DECIPHER', 'ClinGen', 'MEDGEN', 'ICD9', 'MedGen', 'ICD11', 'SCDO',
       'OMIA']
twhetzel commented 4 months ago

Oops, missed one: MONDO:0010962 a synonym ref is DOID:RELATED.

UPDATE: It looks like this was already changed.

twhetzel commented 4 months ago

Confirmed with Joe that this was fixed initially.