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monarch-initiative / mondolib

Python library for mondo QC
https://monarch-initiative.github.io/mondolib/
MIT License
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Move `sssom_to_robot_template` to `mondolib` #12

Open joeflack4 opened 1 month ago

joeflack4 commented 1 month ago

Overview

We created sssom_to_robot_template.py in mondo-ingest in https://github.com/monarch-initiative/mondo-ingest/pull/521, but we want its home to be in mondolib.

Implementation

As a prerequisite for this, which will possibly be handled in the same PR, we may need to generally refactor the mondolib CLI; right now it is pretty focused on a single use case.

joeflack4 commented 1 month ago

Personal notes to self: Needs to be called from the makefile in mondo-ingest, as a command. Look at how I did this w/ owl-to-fhir. Did Harshad already set it up? If he has, then I would need to tie this work into his CLI. Otherwise, make a new CLI. If the refactoring takes more than 2-3 days talk to Trish.