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monarch-initiative / omim

Data ingest pipeline for OMIM.
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OMIMPS labels missing from `mondo.sssom.tsv` #110

Open joeflack4 opened 2 months ago

joeflack4 commented 2 months ago

Overview

I noticed that there are no labels for OMIMPs entries in mondo.sssom.tsv.

joeflack4 commented 2 months ago

@matentzn Any idea offhand why that might be the case?

I looked in the release omim.owl and the labels are there.

CC @twhetzel

matentzn commented 2 months ago

Best guess:

If mondo mapping pipeline uses mondo-ingest.db, then it could be a prefix mismatch in the prefixes.csv in the Mondo repo

joeflack4 commented 2 months ago

I forgot to write this in my OP, but:

  1. Yes, I suspect similar causes.
  2. And hopefully should be resolved by: