HGNC robot template - Githubissues

monarch-initiative / omim

Data ingest pipeline for OMIM.

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HGNC robot template #113

Closed joeflack4 closed 1 week ago

joeflack4 commented 3 weeks ago

Addresses sub-tasks in:

https://github.com/monarch-initiative/mondo-ingest/issues/558

Related:

Overview

Update mondo_genes.csv to be a proper ROBOT template: mondo-omim-genes.robot.tsv

Changes

HGNC ROBOT template

Rename: mondo_genes.csv --> mondo-omim-genes.robot.tsv
Update: Change from CSV to TSV
Update: Set a ROBOT sub-header
Update: remove < > around URIs
Update: remove ?'s at start of col names
Update: insert source_code col, w/ values: MONDO:OMIM

General:

Add: run.sh: For running ODK. And updated README.md w/ docs about that.
Update: README.md: Put some less important stuff in

CC: @souzadevinicius Thought this would be a good one for you to review

twhetzel commented 3 weeks ago

I am also weary of the extreme use of awk and would prefer to find another option.