monarch-initiative / oncoexporter

Cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
6 stars 1 forks source link

morphology and ICD-0 #32

Closed pnrobinson closed 8 months ago

pnrobinson commented 10 months ago

The diagnosis table has entries such as - 8072/3 are ICD-O codes. For instance 8072/3 is Nonkeratinizing squamous cell carcinoma.

Some but not all of these codes are available on NCIT. For instance,

Non-Keratinizing Large Cell Squamous Cell Carcinoma

maps from NCIT:C65173.

Questions

justaddcoffee commented 9 months ago

Does NCIT team have a simple mapping file?

This seems to be it

I've started a PR for this ticket here

justaddcoffee commented 8 months ago

closed by #56