search

monarch-initiative / oncoexporter

A package to convert cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
7 stars 1 forks source link

member_of_research_project #40

Open pnrobinson opened 11 months ago

pnrobinson commented 11 months ago

member_of_research_project is a field in the diagnosis table of CDA. If we want to pull all members of a research project, then probably we would want to do this via the query, and so I think this may not be something we need to store in the phenopacket.

Thoughts?

msierk commented 11 months ago

member_of_research_project is a field in the diagnosis table of CDA. If we want to pull all members of a research project, then probably we would want to do this via the query, and so I think this may not be something we need to store in the phenopacket.

Thoughts?

I think we are going to want to include this because people may want to use the study as a variable. Or they may want to pull out subsets of a cohort they already have a set of phenopackets for rather than redoing the query & conversion.