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monarch-initiative / oncoexporter

Cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
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specimen: anatomical_site #43

Open pnrobinson opened 8 months ago

pnrobinson commented 8 months ago

This corresponds to sampled_tissue in the GA4GH Biosample.

Add it using the cda_biosample_factory class.

msierk commented 7 months ago

It looks like NCIt has UBERON terms mapped already? So we can just use anatomical_site directly with no conversion? https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&version=23.07e&code=C198975&ns=ncit