monarch-initiative / oncoexporter

Cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
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Fix mutation tests #65

Closed ielis closed 6 months ago

ielis commented 6 months ago

@justaddcoffee I am proposing changes to the mutation tests to make them pass.

The issue with the code was that the functions test_gene and test_hgvs did not include all required fields. I changed the test inputs such that the info is present and the tests only update the tested fields, such as Hugo_Symbol and HGVSc.

Some tests fail even after this PR, but we need to resolve those separately.


Pls let me know if the changes correspond to what you intended to test back in the September..