monarch-initiative / oncoexporter

Cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
6 stars 1 forks source link

Stage is all "Unknown" in Lung cohort #90

Open justaddcoffee opened 2 months ago

justaddcoffee commented 2 months ago

As of 2024-05-21, when we run ./run_lung.py, we retrieve a cohort where stage is all "Unknown"

Possibly could be an issue with oncoexporter not parsing the output of the updated CDA?

msierk commented 2 weeks ago

Fixed in https://github.com/monarch-initiative/oncoexporter/pull/91