monarch-initiative / oncoexporter

Cancer data to GA4GH phenopacket
https://monarch-initiative.github.io/oncoexporter
MIT License
6 stars 1 forks source link

Get stage directly from GDC, get data provenance #91

Open msierk opened 1 month ago

msierk commented 1 month ago

Changes to cda_table_importer and cda_disease_factory to account for having to get stage from GDC directly. Changed fetch_rows command to use 'provenance=True' to get source (GDC,PDC,IDC,CDS). Also changed GET to POST to speed things up when querying GDC API. Haven't fully confirmed that the merging of tables with provenance is working properly.