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monarch-initiative / owlsim-v3

Ontology Based Profile Matching
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port annotation sufficiency algorithms #2

Open nlwashington opened 9 years ago

nlwashington commented 9 years ago

port over the annotation sufficiency calculations from sim2

nlwashington commented 8 years ago

cc @tudorgroza @cmungall

julesjacobsen commented 8 years ago

Can you point me to the original? Would help! On 12 Feb 2016 5:51 pm, "Nicole Washington" notifications@github.com wrote:

Assigned #2 https://github.com/monarch-initiative/owlsim-v3/issues/2 to @julesjacobsen https://github.com/julesjacobsen.

— Reply to this email directly or view it on GitHub https://github.com/monarch-initiative/owlsim-v3/issues/2#event-548848851 .

nlwashington commented 8 years ago

Absolutely. Here's an "in" with sim2: https://github.com/owlcollab/owltools/blob/75d7423040959bd235776e58d5d0b11140f7917a/OWLTools-Sim/src/main/java/owltools/sim2/AbstractOwlSim.java#L1017

and here's the webservice: https://github.com/owlcollab/owltools/blob/75d7423040959bd235776e58d5d0b11140f7917a/OWLTools-Sim/src/main/java/owltools/sim2/SimJSONEngine.java#L347

it has dependencies on the whole system stats: https://github.com/owlcollab/owltools/blob/75d7423040959bd235776e58d5d0b11140f7917a/OWLTools-Sim/src/main/java/owltools/sim2/AbstractOwlSim.java#L777

Hopefully I left you with reasonable code to reimplement!