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monarch-initiative / owlsim-v3

Ontology Based Profile Matching
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Error running Makefile #26

Open balhoff opened 8 years ago

balhoff commented 8 years ago 
wget http://purl.obolibrary.org/obo/upheno/data/omim-disease-phenotype.owl  -O src/test/resources/data/omim-disease-phenotype.owl
--2016-05-16 13:57:07--  http://purl.obolibrary.org/obo/upheno/data/omim-disease-phenotype.owl
Resolving purl.obolibrary.org... 52.3.123.63
Connecting to purl.obolibrary.org|52.3.123.63|:80... connected.
HTTP request sent, awaiting response... 302 Moved Temporarily
Location: http://build.berkeleybop.org/view/Monarch/job/generate-triples-from-nif/lastSuccessfulBuild/artifact/target/omim-disease-phenotype.owl [following]
--2016-05-16 13:57:08--  http://build.berkeleybop.org/view/Monarch/job/generate-triples-from-nif/lastSuccessfulBuild/artifact/target/omim-disease-phenotype.owl
Resolving build.berkeleybop.org... 131.243.192.185
Connecting to build.berkeleybop.org|131.243.192.185|:80... connected.
HTTP request sent, awaiting response... 404 Not Found
2016-05-16 13:57:08 ERROR 404: Not Found.

make: *** [src/test/resources/data/omim-disease-phenotype.owl] Error 8
ManavalanG commented 7 years ago

I have the same issue as above. It also fails with file 'disorders.ttl' Makefile:18: recipe for target 'src/test/resources/data/disorders.ttl' failed make: *** [src/test/resources/data/disorders.ttl] Error 8

cmungall commented 7 years ago

Should probably remove the makefile it's only required for running some of the performance tests. Are you able to make progress without resolving this issue?

ManavalanG commented 7 years ago

I was trying to get them to see if these files can be used to run owlsim-v3 locally for semantic similarity calculations. Can they be used with monarch-app locally?