pnrobinson
commented
6 years ago Hi Julie,
there are many sorting algorithms, but why not just do something simple and sort the terms according to the same predefined scheme or organs.
brain
-morphology
--sub part 1
-subpart 2
-physiology
heart
-morphology
-physiology?
etc.
Then our users would get used to some default ordering.
-Peter
Peter Robinson
Professor and Donald A. Roux Chair, Genomics and Computational Biology
The Jackson Laboratory for Genomic Medicine
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Farmington, CT 06032
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peter.robinson@jax.orgmailto:peter.robinson@jax.org
www.jax.org
Robinson lab: https://robinsongroup.github.io/
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From: Julie McMurry notifications@github.com Sent: Monday, December 4, 2017 7:17 PM To: monarch-initiative/owlsim-v3 Cc: Subscribed Subject: [monarch-initiative/owlsim-v3] Phenotype sort (#92)
We'd like an algorithm that orders a list of phenotypes in a way that minimizes the sum of the sim distances between adjacent terms, with an option to co-sort two similar lists as well (retaining their membership in the original lists).
Note that ideally, any runner-up matches would be noted (and sorted) as such; see genome-one/monarch#35https://github.com/genome-one/monarch/issues/35
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We'd like an algorithm that orders a list of phenotypes in a way that minimizes the sum of the sim distances between adjacent terms, with an option to co-sort two similar lists as well (retaining their membership in the original lists).
Note that ideally, any runner-up matches would be noted (and sorted) as such; see https://github.com/monarch-initiative/monarch-app/issues/1525 which replaces https://github.com/genome-one/monarch/issues/35