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monarch-initiative / phenogrid

The phenogrid widget
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Update Uniqueness result to percentage #142

Closed yuanzhou closed 9 years ago

yuanzhou commented 9 years ago

Currently it uses the IC score in common as the Uniqueness result, will change this to a calculated percentage.

According to the help text in popup:

Uniqueness reflects how often the phenotype-in-common is annotated to all diseases and genes in the Monarch Initiative knowledgebase. This is simply a reflection of the IC normalized based on the maxIC. IC(PhenotypeInCommon)maxIC(AllPhenotypes)

Should the correct calculation be 

IC(PhenotypeInCommon) / maxIC(AllPhenotypes)

Am I right? @harryhoch

yuanzhou commented 9 years ago

Already changed, @harryhoch please double check and let me know if I can close this issue or you can just close it.

harryhoch commented 9 years ago

@yuanzhou, I will spend a bit of time on this and let you know later this morning.