Implement ontology graph backed by a CSR connectivity matrix.

monarch-initiative / phenol

phenol: Phenotype ontology library

https://phenol.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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Implement ontology graph backed by a CSR connectivity matrix. #436

Closed ielis closed 1 year ago

ielis commented 1 year ago

Implement CSR graph to replace JGraphT, update the MinimalOntology interface + deprecate methods. Implement SimpleMinimalOntology backed by the new CSR graph.

TODO

[x] - hook SimpleMinimalOntology with the code in phenol-io