Aim 2.1.2 Maintain high-quality equivalence mappings, working with the community to resolve upstream issues.

[sagehrke]

Key people

Architecture

• @matentzn
• @cmungall

Software and data engineering

• @joeflack4
• @hrshdhgd

Curation

• @sabrinatoro
• @nicolevasilevsky

Key results

• [ ] https://github.com/monarch-initiative/mondo-ingest/issues

[matentzn]

Key results reporting period 2022/2023

• Finished a working draft of the lexical matching pipeline based on OAK (@hrshdhgd)
• Finished a working draft of the slurp pipeline, i.e. the process that imports terms from external ontologies into Mondo (@joeflack4)
• Almost finished:
  • A working reconciliation workflow with boomer (QC for existing mappings -> Identifying and curating cliques, @hrshdhgd)
  • A progress monitor for see, with every mondo ingest sync run, how many terms are mapped, excluded, unmapped and so on (@joeflack4)
• Early draft:
  • Syncing pipeline, i.e. a way to synchronise changes in upstream ontologies in Mondo (@joeflack4)

Notes

We made great progress with the technical team, but now we need a serious curation commitment to move forward. See also https://github.com/monarch-initiative/phenomics_first_resource/issues/26#issuecomment-1642002494