Aim 1.1.2 Refactor and align existing phenotype ontologies

[matentzn]

We will apply these templates to taxon-specific phenotype ontologies, improving inter-ontology alignment and automated classification (Figure 10B,D) within individual ontologies. During the course of this work, we aim to increase coverage of uPheno templates from currently around 12% to more than 90% of all phenotype definitions across the community (we note some phenotypes will lack computable definitions as not all biology is expressible in OWL).

Key people

• @rays22
• @jamesamcl

Action items

• [x] @rays22 to familiarise himself with the goals formulated in the grant
• [ ] @rays22 to link all relevant issues and/or pull requests to this issue
• [ ] @rays22 to formulate concrete goals to achieve based on last PFR meeting and add to this issue

[matentzn]

RPPR August 2022 - July 2023

Cross-species mappings

• Supporting the precise manual mapping of cross-species phenotype ontologies by community (mgi1)

[matentzn]

Notes to self:

• we should achieve, and document, the integration of various post-composed approaches such as APO and Flybase