This PR adds some code to extract all of the phenopackets in this repository and add them to a zip or gzip file. It also creates pandas dataframes with summaries. I would like to reformat the directory structure so that we write the phenopackets for each notebook into the same folder. For some reason the shutil copying does not seem to be working so that the output archive is empty.
This PR adds some code to extract all of the phenopackets in this repository and add them to a zip or gzip file. It also creates pandas dataframes with summaries. I would like to reformat the directory structure so that we write the phenopackets for each notebook into the same folder. For some reason the shutil copying does not seem to be working so that the output archive is empty.