Put all cohort folders, phenopackets, and the summary file into the top-level directory (root) to prevent flooding the target directory with folders and files.
The name of the root folder is equal to the archive name.
The PR adds a test suite to check the following specifications:
the archive includes a summary TSV file
the archive includes all phenopackets as JSON files
there is just one top-level directory (root)
all files and folders are located in the root directory
Put all cohort folders, phenopackets, and the summary file into the top-level directory (root) to prevent flooding the target directory with folders and files.
The name of the root folder is equal to the archive name.
The PR adds a test suite to check the following specifications:
The specs are tested in the test
Fixes #96