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monarch-initiative / pheval.exomiser

Exomiser plugin for PhEval.
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57 exomiser v14 whitelist option in application.properties #58

Closed yaseminbridges closed 5 months ago

yaseminbridges commented 5 months ago

Changed the default writing of the whitelist to the application.properties. Now, this will need to be specified in the config.yaml - this will avoid errors when running with Exomiser 14.0.0 (as it is now included in the dbs) and allow running with 13.3.0 and earlier.

yaseminbridges commented 5 months ago

You could consider changing the variable 'hg19_whitelist' to 'hg19_whitelist_path' to match the actual field in the application.properties and signal that the value is suppoed to be a path and not just a file name.

Done!