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monarch-initiative / pheval

A framework for empirical evaluation of phenotype matching and prioritisation
https://monarch-initiative.github.io/pheval/
Apache License 2.0
12 stars 1 forks source link

Create OntoGPT runner #159

Closed yaseminbridges closed 5 months ago

yaseminbridges commented 1 year ago

Create an OntoGPT runner for comparison with Exomiser in disease prioritisation.

yaseminbridges commented 1 year ago

Very basic runner set up at: https://github.com/yaseminbridges/pheval.ontogpt

API key for open AI expected to be set up beforehand

matentzn commented 1 year ago

Wow great work!! Does this work at all? Is it ready to be folded as into the main pipeline?

yaseminbridges commented 1 year ago

Yep, this does work for me! It'd be great if @souzadevinicius could test on his machine to see if there are any problems, but I would say it is ready to be folded into the main pipeline