monarch-initiative / pheval

A framework for empirical evaluation of phenotype matching and prioritisation

https://monarch-initiative.github.io/pheval/

Apache License 2.0

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Closed yaseminbridges closed 9 months ago

yaseminbridges commented 9 months ago

Addition of the calculation of f beta score @ k.

This score is a weighted harmonic mean of precision and recall. The beta value is set to 1 so there is equal weighting to both precision and recall.

Note:

274 should be reviewed and merged first as this branch was created from it - any changes requested there will need to be reflected here too

julesjacobsen commented 9 months ago

You should add your note about beta being set to 1 in the docs as well as here in the PR.

yaseminbridges commented 9 months ago

You should add your note about beta being set to 1 in the docs as well as here in the PR.

Done!