monarch-initiative / pheval

A framework for empirical evaluation of phenotype matching and prioritisation
https://monarch-initiative.github.io/pheval/
Apache License 2.0
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304 change matching of result files to phenopacket in benchmarking #305

Closed yaseminbridges closed 7 months ago

yaseminbridges commented 7 months ago

The current method in the benchmarking for the matching of phenopackets to corresponding result files is unreliable and can sometimes return the incorrect matched file.

For a single phenopacket named:

case_1.json

The resultant name for the pheval TSV for gene prioritisation should be named

case_1-pheval_gene_result.tsv

Following this I can change the method to be somewhat more reliable in obtaining the correct phenopacket for a result file