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monarch-initiative / pheval

A framework for empirical evaluation of phenotype matching and prioritisation
https://monarch-initiative.github.io/pheval/
Apache License 2.0
12 stars 1 forks source link

Implemented PhEval runners #306

Closed yaseminbridges closed 5 months ago

yaseminbridges commented 5 months ago

Exomiser -> https://github.com/monarch-initiative/pheval.exomiser Phen2Gene -> https://github.com/yaseminbridges/pheval.phen2gene LIRICAL -> https://github.com/yaseminbridges/pheval.lirical SvAnna -> https://github.com/yaseminbridges/pheval.svanna GADO -> https://github.com/yaseminbridges/pheval.gado Template (this just runs a made up GP the idea was this is a repository people could clone and implement methods) -> https://github.com/yaseminbridges/pheval.template OntoGPT -> https://github.com/monarch-initiative/pheval.ontogpt

@matentzn

matentzn commented 5 months ago

Wohooo! You have been.. active!

Is there any reason you have them in your private github? For funding reasons, we should have everything related to the project that build on grant funding in the monarch initiative org.. Or is there a specific reason you have them all in your space?

matentzn commented 5 months ago

Can you create a plugins.md in https://github.com/monarch-initiative/pheval/tree/main/docs

And just make a markdown table in there with all those and the links to them? And a comment column where you can add a link to the orginal tool!

Super cool!

yaseminbridges commented 5 months ago

No problem, I'll more them all to the monarch initiative org!