Added separate --hg19-template-vcf and --hg38-template-vcf arguments to the spike vcf command. This allows a corpus of phenopackets with mixed assemblies to be spiked into vcfs.
There is also a refactoring of the methods so that each VCF (if specified) is only read and parsed once during the workflow - this is to improve efficiency and cut down the time taken to carry out the command.
Added separate
--hg19-template-vcfand--hg38-template-vcfarguments to the spike vcf command. This allows a corpus of phenopackets with mixed assemblies to be spiked into vcfs.There is also a refactoring of the methods so that each VCF (if specified) is only read and parsed once during the workflow - this is to improve efficiency and cut down the time taken to carry out the command.