If a variant entry position cannot be found for spiking a variant into a template VCF an Index error is thrown. For example, if the phenopacket has a variant on chrX, and there are no records of chrX variants in the VCF, then the index error is thrown. To overcome this, just add the variant to the end of the file and write a logger warning
If a variant entry position cannot be found for spiking a variant into a template VCF an Index error is thrown. For example, if the phenopacket has a variant on chrX, and there are no records of chrX variants in the VCF, then the index error is thrown. To overcome this, just add the variant to the end of the file and write a logger warning