monarch-initiative / pyphetools

Python Phenopacket Tools
https://monarch-initiative.github.io/pyphetools/
MIT License
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output tables from collections of phenopackets #112

Open pnrobinson opened 2 months ago

pnrobinson commented 2 months ago

We want to enable phenopackets to general tables that look like Table 1 here https://molecularcasestudies.cshlp.org/content/9/4/a006293/T1.expansion.html There are several commonly used table formats -- summary, like this, and tables that include all data for each individual. The later sometimes summarize all phenotypes from a certain organ system, e.g., heart, in the table cell, potentially with a set of abbreviations.