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monarch-initiative / pyphetools

Python Phenopacket Tools
https://monarch-initiative.github.io/pyphetools/
MIT License
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Error when installing Jupyter kernel #29

Closed hansenp closed 10 months ago

hansenp commented 11 months ago

If I follow the instructions to install pyphetools, then I get the following error when installing the Jupyter kernel:

$ python -m ipykernel install --name "ppt_env" --display-name "ppt_env"
[Errno 13] Permission denied: '/usr/local/share/jupyter'

If I run the following command instead then I don't get this error.

$ python -m ipykernel install --name "ppt_env" --display-name "ppt_env" --user
Installed kernelspec ppt_env in /Users/hansep/Library/Jupyter/kernels/ppt_env

I would suggest changing the documentation accordingly.

pnrobinson commented 10 months ago

Thanks for pointing this out -- I have changed the instructions!

hansenp commented 3 months ago

I'm reopening this issue because the related documentation is unchanged and I'm getting the same error as described above. A solution to the problem is also described above.