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monarch-initiative / vertebrate-breed-ontology

https://monarch-initiative.github.io/vertebrate-breed-ontology/
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Confusion between FMA and NCBITaxon IDs? #52

Closed cmungall closed 1 year ago

cmungall commented 1 year ago

Drawing a tree with OAK:

vbo tree VBO:0003256

* [] FMA:1 ! root
    * [i] FMA:131567 ! cellular organisms
        * [i] FMA:2759 ! Eukaryota
            * [i] FMA:33154 ! Opisthokonta
                * [i] FMA:33208 ! Metazoa
                    * [i] FMA:6072 ! Eumetazoa
                        * [i] FMA:33213 ! Bilateria
                            * [i] FMA:33511 ! Deuterostomia
                                * [i] FMA:7711 ! Chordata
                                    * [i] FMA:89593 ! Craniata <chordates>
                                        * [i] FMA:7742 ! Vertebrata <vertebrates>
                                            * [i] FMA:7776 ! Gnathostomata <vertebrates>
                                                * [i] FMA:117570 ! Teleostomi
                                                    * [i] FMA:117571 ! Euteleostomi
                                                        * [i] FMA:8287 ! Sarcopterygii
                                                            * [i] FMA:1338369 ! Dipnotetrapodomorpha
                                                                * [i] FMA:32523 ! Tetrapoda
                                                                    * [i] FMA:32524 ! Amniota
                                                                        * [i] FMA:40674 ! Mammalia
                                                                            * [i] FMA:32525 ! Theria <mammals>
                                                                                * [i] FMA:9347 ! Eutheria
                                                                                    * [i] FMA:1437010 ! Boreoeutheria
                                                                                        * [i] FMA:314145 ! Laurasiatheria
                                                                                            * [i] FMA:91561 ! Artiodactyla
                                                                                                * [i] FMA:9845 ! Ruminantia
                                                                                                    * [i] FMA:35500 ! Pecora
                                                                                                        * [i] FMA:9895 ! Bovidae
                                                                                                            * [i] FMA:27592 ! Bovinae
                                                                                                                * [i] FMA:9903 ! Bos
                                                                                                                    * [i] FMA:9913 ! Bos taurus
                                                                                                                        * [i] VBO:0000237 ! Holstein (black and white) (Cattle)
                                                                                                                            * [i] **VBO:0003256 ! Friesian, Seychelles (Cattle)**

I think those are all NCBITaxon IDs with a fake FMA prefix

cmungall commented 1 year ago

my mistake