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mongiardino / genesortR

Sorting and subsampling phylogenomic datasets
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Problem with p-dist #6

Closed luishdez35 closed 9 months ago

luishdez35 commented 1 year ago

Hello, thank you for this script, is amazing. I am trying to use it but I have a problem in the line 252 with the command: p_dist <- as.matrix(dist.hamming(as.phyDat(gene, type = type), ratio = TRUE, exclude = "pairwise"))

The error is 

Error in tabulate(index, max(index)) : invalid value of 'nbins'
In addition: Warning messages:
1: In max(index) : no non-missing arguments to max; returning -Inf
2: In tabulate(index, max(index)) :
  NAs introduced by coercion to integer range

Can you please help me?

Thanks

mongiardino commented 1 year ago

Hola Luis! I am glad the script has been useful for you (and I'm sorry for the late reply). This error relates to some unexpected structure in your datasets, which I can't really figure out without having them. I would gladly take a look if you can send me an email with all the files you are using to run it. Cheers, Nico